datatypes

This section is auto-generated from the help text for the parsec command datatypes.

get_datatypes command

Usage:

parsec datatypes get_datatypes [OPTIONS]

Help

Get the list of all installed datatypes.

Output

A list of datatype names.

For example:

[u'snpmatrix',
 u'snptest',
 u'tabular',
 u'taxonomy',
 u'twobit',
 u'txt',
 u'vcf',
 u'wig',
 u'xgmml',
 u'xml']

Options:

--extension_only TEXT
--upload_only TEXT
-h, --help             Show this message and exit.

get_sniffers command

Usage:

parsec datatypes get_sniffers [OPTIONS]

Help

Get the list of all installed sniffers.

Output

A list of sniffer names.

For example:

[u'galaxy.datatypes.tabular:Vcf',
 u'galaxy.datatypes.binary:TwoBit',
 u'galaxy.datatypes.binary:Bam',
 u'galaxy.datatypes.binary:Sff',
 u'galaxy.datatypes.xml:Phyloxml',
 u'galaxy.datatypes.xml:GenericXml',
 u'galaxy.datatypes.sequence:Maf',
 u'galaxy.datatypes.sequence:Lav',
 u'galaxy.datatypes.sequence:csFasta']

Options:

-h, --help  Show this message and exit.